collapseGenes: Collapse a vector of gene names

In steveped/chipExtra: Additional functions for working with ChIP-Seq data

Collapse a vector of gene names

Description

Collapse a vector of gene names

Usage

collapseGenes(
  x,
  sort = TRUE,
  dedup = TRUE,
  format = "_",
  sep = ", ",
  last = " and ",
  numeric = TRUE,
  width = Inf,
  ...
)

Arguments

x	character vector representing gene names
sort	logical(1) Should the names be sorted alphabetically
dedup	logical(1) Should duplicate names be removed
format	character string for markdown formatting of each element
sep	separator between vector elements
last	character string to place before the last element
numeric	logical(1) sort digits numerically, instead of as strings
width	The maximum width of the string before truncating to ...
...	passed to str_sort

Details

Convenience function to collapse a vector of gene names into a character/glue object of length 1. By default, symbols are deduplicated, sorted alpha-numerically and italicised with an underscore.

Value

a glue object

Examples

genes <- c("FOXP3", "BRCA1", "TP53")
collapseGenes(genes)

steveped/chipExtra documentation built on Aug. 1, 2024, 12:33 a.m.