chopMC: Keep unique ranges and collapse mcols
In steveped/chipExtra: Additional functions for working with ChIP-Seq data
chopMC R Documentation
Keep unique ranges and collapse mcols
Description
Keep unique ranges by 'chopping' mcols
Usage
chopMC(x, simplify = TRUE)
Arguments
x
A GenomicRanges object
simplify
logical(1)
Details
This function finds unique ranges and chops all mcols in a manner similar
to chop.
Chopped columns will be returned as CompressedList columns, unless
simplify = TRUE (the default).
In this case, columns will be returned as vectors where possible.
Value
A GRanges object
Examples
gr <- GRanges(rep(c("chr1:1-10"), 2))
gr$id <- paste0("range", seq_along(gr))
gr$gene <- "gene1"
gr
chopMC(gr)
steveped/chipExtra documentation built on May 2, 2024, 12:11 p.m.
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| chopMC | R Documentation |
Keep unique ranges and collapse mcols
Description
Keep unique ranges by 'chopping' mcols
Usage
chopMC(x, simplify = TRUE)
Arguments
x |
A GenomicRanges object |
simplify |
logical(1) |
Details
This function finds unique ranges and chops all mcols in a manner similar
to chop.
Chopped columns will be returned as CompressedList columns, unless
simplify = TRUE (the default).
In this case, columns will be returned as vectors where possible.
Value
A GRanges object
Examples
gr <- GRanges(rep(c("chr1:1-10"), 2))
gr$id <- paste0("range", seq_along(gr))
gr$gene <- "gene1"
gr
chopMC(gr)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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