cytobands: Cytogenetic bands

In steveped/chipExtra: Additional functions for working with ChIP-Seq data

Cytogenetic bands

Description

Cytogenetic bands for GRCh37/hg19 and GRCh38/hg38

Usage

data(grch37.cytobands)

data(grch38.cytobands)

Format

Cytogenetic bands for standard chromosomes from GRCh37,in the format required by IdeogramTrack. A data.frame with 5 columns:

chrom

Chromosome

chromStart

Starting position for each cytogenetic band

chromEnd

End position for each cytogenetic band

name

Name for each band, e.g. p.36.33

gieStain

Staining pattern

An object of class data.frame with 862 rows and 5 columns.

Source

https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz

https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz

Examples

data(grch37.cytobands)
head(grch37.cytobands)

data(grch38.cytobands)
head(grch38.cytobands)

steveped/chipExtra documentation built on Aug. 1, 2024, 12:33 a.m.