FastqcDataList: The FastqcDataList Object Class

In steveped/ngsReports: Load FastqQC reports and other NGS related files

The FastqcDataList Object Class

Description

The FastqcDataList Object Class

Usage

FastqcDataList(x)

Arguments

x	Character vector of file paths specifying paths to FastQC reports

Value

An object of class FastqcDataList

Slots

...

this can either be a single character vector of paths to FASTQC files, or several instances of .FastqcFile objects

Examples

# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)
fdl

steveped/ngsReports documentation built on April 2, 2024, 5:10 p.m.