dot-FastpFile-class: The .FastpFile Object Class

In steveped/ngsReports: Load FastqQC reports and other NGS related files

The .FastpFile Object Class

Description

The .FastpFile Object Class defines a path to the output from the standalone tool fastp.

Arguments

x	character(1) denoting a file.path

Details

This class simply refers to a fastp output file after checking for existence and validity (i.e. the correct internal structure). Underlying files are expected to be in json format

The helper function .FastpFile() is a simple constructor which checks validity and enables construction of other dependent classes.

Value

An object of class .FastqcFile

Slots

path

Character vector of length 1 which contains a valid file path.

steveped/ngsReports documentation built on April 2, 2024, 5:10 p.m.