dot-makeDendro: Make the dendrogram for heatmap-style plots

In steveped/ngsReports: Load FastqQC reports and other NGS related files

Make the dendrogram for heatmap-style plots

Description

Set the clusters for heatmap-style interactive plots

Usage

.makeDendro(df, rowVal, colVal, value)

Arguments

df	The data frame to be clustered
rowVal	The rows to be clustered
colVal	The value which will become column names
value	The value to use for the clustering

Value

A dendrogram

Examples

# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fileList <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)
cols <- c("Filename", "Position", "Illumina_Universal_Adapter")
ac <- getModule(fileList, "Adapter_Content")[cols]
ngsReports:::.makeDendro(df = ac,
                            rowVal = "Filename",
                            colVal = "Position",
                            value = "Illumina_Universal_Adapter")

steveped/ngsReports documentation built on July 24, 2024, 10:45 a.m.