CreateSynCatalogs: Generate synthetic spectra catalogs given signature profiles...

In steverozen/SynSigGen: Create Catalogs of Synthetic Mutational Spectra

Generate synthetic spectra catalogs given signature profiles and synthetic exposures.

Description

Generate synthetic spectra catalogs given signature profiles and synthetic exposures.

Usage

CreateSynCatalogs(signatures, exposures, sample.id.suffix = NULL)

Arguments

signatures	The signature profiles.
exposures	The synthetic exposures.
sample.id.suffix	A string for adding a suffix to sample ID. For example, if sample.id.suffix is "abc", then SomeCancerType::s1.33 is changed to SomeCancerType::s1-abc.33. Actually, this just replaces the first "." in the sample id with "-" concatenated to sample.id.suffix. TODO(Steve): probably drop this

Value

A list of three elements that comprise the synthetic data:

1. ground.truth.catalog: Spectra catalog for the software input.

2. ground.truth.signatures: Signatures active in ground.truth.catalog.

3. ground.truth.exposures: Exposures of ground.truth.signatures in ground.truth.catalog.

steverozen/SynSigGen documentation built on April 1, 2022, 8:54 p.m.