|build.matrix.from.traits||Build a predicted adjacency matrix based on trait values|
|eklof||Sample food-web dataset with which to study phylogenetic...|
|minimize.phylo.gaps.sa||Minimize diet gaps in an adjacency matrix based on prey...|
|minimize.phylo.gaps.sd||Minimize diet gaps in an adjacency matrix based on prey...|
|overlap.combinations||Calculate the overlap based on combinations of traits|
|phylo.correction||Remove potential phylogenetic signal from a set of continuous...|
|phylo.signal||Function to compute phylogenetic signal of a discrete trait...|
|plot.phylo.gaps||Plot a tree coordinate object in the xy plane and an ordered...|
|sa.start||Estimate a starting temperature for simulated annealing|
|sum.phylo.gaps||Calculate the number of diet gaps in an adjacency matrix...|
|swap.tree||Permute a pair of sister clades in a phylogenetic tree|
|tree.coord||Calculate the xy-coordinates of nodes in a phylogenetic tree|
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