Phylogenetic components of food-web intervality

build.matrix.from.traits | Build a predicted adjacency matrix based on trait values |

eklof | Sample food-web dataset with which to study phylogenetic... |

minimize.phylo.gaps.sa | Minimize diet gaps in an adjacency matrix based on prey... |

minimize.phylo.gaps.sd | Minimize diet gaps in an adjacency matrix based on prey... |

overlap.combinations | Calculate the overlap based on combinations of traits |

phylo.correction | Remove potential phylogenetic signal from a set of continuous... |

phyloint | phyloint. |

phylo.signal | Function to compute phylogenetic signal of a discrete trait... |

plot.phylo.gaps | Plot a tree coordinate object in the xy plane and an ordered... |

sa.start | Estimate a starting temperature for simulated annealing |

sum.phylo.gaps | Calculate the number of diet gaps in an adjacency matrix... |

swap.tree | Permute a pair of sister clades in a phylogenetic tree |

tree.coord | Calculate the xy-coordinates of nodes in a phylogenetic tree |

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