minimize.phylo.gaps.sa: Minimize diet gaps in an adjacency matrix based on prey...
In stoufferlab/phyloint: Phylogenetic components of food-web intervality
Description
Minimize diet gaps in an adjacency matrix based on prey phylogeny using simulated annealing
Usage
1
2
3
minimize.phylo.gaps.sa(adj, phy, t.start = NA, p.start = 0.5,
start.reps = 100, start.type = "mean", n.temps = NA, t.min = 1e-05,
t.cooling = 0.99, swap.factor = 1, verbose = FALSE)
Arguments
adj
an adjacency matrix of class 'matrix'
phy
a phylogenetic tree of class 'phylo'
stoufferlab/phyloint documentation built on May 30, 2019, 7:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Minimize diet gaps in an adjacency matrix based on prey phylogeny using simulated annealing
Usage
1 2 3 | minimize.phylo.gaps.sa(adj, phy, t.start = NA, p.start = 0.5,
start.reps = 100, start.type = "mean", n.temps = NA, t.min = 1e-05,
t.cooling = 0.99, swap.factor = 1, verbose = FALSE)
|
Arguments
adj |
an adjacency matrix of class 'matrix' |
phy |
a phylogenetic tree of class 'phylo' |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.