sa.start: Estimate a starting temperature for simulated annealing
In stoufferlab/phyloint: Phylogenetic components of food-web intervality
Description
Estimate a starting temperature for simulated annealing
Usage
1
sa.start(adj, phy, prob = 0.5, reps = 100, start.type = "mean")
Arguments
adj
The adjacency matrix
phy
The phylo object
prob
The target initial probability of accepting a move; defaults to 0.50
reps
The number of reps to estimate across; defaults to 100
start.type
Whether the target probability refers to accepting the min, mean, or max change; defaults to mean
stoufferlab/phyloint documentation built on May 30, 2019, 7:23 p.m.
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Description
Estimate a starting temperature for simulated annealing
Usage
1 | sa.start(adj, phy, prob = 0.5, reps = 100, start.type = "mean")
|
Arguments
adj |
The adjacency matrix |
phy |
The phylo object |
prob |
The target initial probability of accepting a move; defaults to 0.50 |
reps |
The number of reps to estimate across; defaults to 100 |
start.type |
Whether the target probability refers to accepting the min, mean, or max change; defaults to mean |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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