landscape.theta.s: Calculate theta using segregating sites
In stranda/kernelPop2: Spatially explicit population genetic simulations
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Calculate theta from a landscape based upon
the number of seqregating sites.
Usage
1
theta.s.mat <- landscape.theta.s(rland)
Arguments
rland
the Rmetasim landscape object
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element
reflects the estimated theta for that population x locus combination
See Also
theta.k.landscape, theta.h.landscape
Examples
1
2
3
4
# exampleland <- landscape.new.example()
# exampleland <- landscape.simulate(exampleland, 4)
# theta.s.mat <- landscape.theta.s(exampleland)
# theta.s.mat
stranda/kernelPop2 documentation built on March 30, 2020, 5:37 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
Calculate theta from a landscape based upon the number of seqregating sites.
Usage
1 | theta.s.mat <- landscape.theta.s(rland)
|
Arguments
rland |
the Rmetasim landscape object |
Details
Uses routines in the package 'ape'
Value
A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination
See Also
theta.k.landscape, theta.h.landscape
Examples
1 2 3 4 | # exampleland <- landscape.new.example()
# exampleland <- landscape.simulate(exampleland, 4)
# theta.s.mat <- landscape.theta.s(exampleland)
# theta.s.mat
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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