Files in stranda/kernelPop2
Spatially explicit population genetic simulations

.gitignore
CHANGELOG
DESCRIPTION
NAMESPACE
R/FWright.landscape.R R/Fst.landscape.R R/advance.landscape.R R/allelecount.landscape.R R/allelefreq.landscape.R R/amova.R R/carry-stage.R R/carry.landscape.R R/create.progeny.landscape.R R/demography.landscape.R R/distance-functions.R R/dmixed.R R/exp.het.landscape.R R/fdist.R R/genepopR.R R/generatelocations.R R/geneseq.R R/indxfreq.R R/is.landscape.R R/is.nsquare.R R/landscape.clean.R R/landscape.democol.R R/landscape.extinct.R R/landscape.kernel.demos.R R/landscape.kernel.plot.R R/landscape.sample.R R/locus.R R/locusvec.R R/makealleles.R R/mismatchdist.R R/mixed-dist-prob-functions.R R/new.epoch.R R/new.example.landscape.R R/new.expression.R R/new.floatparam.R R/new.individuals.R R/new.intparam.R R/new.intparam.land.R R/new.landscape.default.R R/new.landscape.empty.R R/new.local.demo.R R/new.locus.R R/new.switchparam.land.R R/obs.het.landscape.R R/phenotypes.R R/ploidy.R R/plot.landscape.locations.R R/plot.landscape.popsizedist.R R/plot.landscape.progeny.R R/plot.landscape.stgsizedist.R R/populations.R R/read.landscape.R R/reproduce.landscape.R R/rm.lambda.R R/simcoal.R R/simulate.landscape.R R/states.R R/survive.landscape.R R/tajima.d.landscape.R R/test.landscape.function.R R/theta.h.landscape.R R/theta.k.landscape.R R/theta.s.landscape.R R/typelookup.R R/utilities.R R/write.landscape.R README.md inst/doc/kernelPop-intro.R inst/doc/kernelPop-intro.pdf
inst/doc/kernelPop-intro/Makefile
inst/doc/kernelPop-intro/Rplots.ps
inst/doc/kernelPop-intro/biosys.txt
inst/doc/kernelPop-intro/demography.pdf
inst/doc/kernelPop-intro/diploid-arlequin.arb
inst/doc/kernelPop-intro/genepop.out
inst/doc/kernelPop-intro/infile
inst/doc/kernelPop-intro/kernelPop-intro.R
inst/doc/kernelPop-intro/kernelPop-intro.Rnw
inst/doc/kernelPop-intro/kernelPop-intro.aux
inst/doc/kernelPop-intro/kernelPop-intro.log
inst/doc/kernelPop-intro/kernelPop-intro.pdf
inst/doc/kernelPop-intro/kernelPop-intro.tex
inst/doc/kernelPop-intro/landscape-object.pdf inst/doc/kernelPop-intro/metamarkov.pdf
inst/doc/kernelPop-intro/migrate.infile
inst/doc/landscape-pollen.png
inst/doc/landscape-seed.png
inst/doc/test/Rplots.ps
inst/doc/test/distance-functions.R inst/doc/test/landscape-kernels.R inst/doc/test/pollen.kernel.R inst/doc/test/seed.kernel.R inst/doc/test/seed.kernel.stage.R inst/examples/analysis.R inst/examples/helpers.R inst/examples/test.R inst/examples/test2.R inst/examples/test3.R inst/examples/test4.R inst/examples/test5.R inst/examples/test6.R inst/examples/test7.R inst/examples/test8.R inst/examples/testCrash.R inst/examples/testPhenoFunction.R man/SimulationComponents.Rd man/is.landscape.Rd man/landscape.FWright.Rd man/landscape.Fst.Rd man/landscape.allelecount.Rd man/landscape.allelefreq.Rd man/landscape.amova.Rd man/landscape.amova.locus.Rd man/landscape.amova.pairwise.Rd man/landscape.clean.Rd man/landscape.coalinput.Rd man/landscape.democol.Rd man/landscape.demography.Rd man/landscape.exp.het.Rd man/landscape.genepop.output.Rd man/landscape.generate.locations.Rd man/landscape.locus.Rd man/landscape.locus.states.Rd man/landscape.locusvec.Rd man/landscape.new.empty.Rd man/landscape.new.epoch.Rd man/landscape.new.example.Rd man/landscape.new.expression.Rd man/landscape.new.floatparam.Rd man/landscape.new.individuals.Rd man/landscape.new.intparam.Rd man/landscape.new.local.demo.Rd man/landscape.new.locus.Rd man/landscape.new.switchparam.Rd man/landscape.obs.het.Rd man/landscape.ploidy.Rd man/landscape.plot.locations.Rd man/landscape.pollen.kernel.demo.Rd man/landscape.populations.Rd man/landscape.sample.Rd man/landscape.simulate.Rd man/landscape.states.Rd man/landscape.test.function.Rd man/landscape.theta.h.Rd man/landscape.theta.k.Rd man/landscape.theta.s.Rd man/landscape.to.rtheta.Rd man/landscape.write.fdist.Rd man/landscape.write.foreign.Rd
src/AlleleObj.cc
src/AlleleObj.h
src/AlleleTbl.cc
src/AlleleTbl.h
src/BaseObj.cc
src/BaseObj.h
src/Democlass_space.cc
src/Democlass_space.h
src/FastAllele.cc
src/FastAllele.h
src/Genotype.cc
src/Genotype.h
src/Landscape_space.cc
src/Landscape_space.h
src/Makevars
src/PackedIndividual_space.cc
src/PackedIndividual_space.h
src/RandLib.cc
src/RandLib.h
src/SiteObj.cc
src/SiteObj.h
src/TransMat.cc
src/TransMat.h
src/const.h
src/kernelPop.cc
src/kernelPop.h
src/metasim.h
src/utilities.h
stranda/kernelPop2 documentation built on Sept. 11, 2018, 3:50 a.m.