Files in stranda/rmetasim
An Individual-Based Population Genetic Simulation Environment
.Rbuildignore
.gitignore
CHANGELOG
DESCRIPTION
NAMESPACE
R/amova.R
R/assign.R
R/create_landscape.R
R/demography.R
R/diversity.R
R/dnadiversity.R
R/graphics.R
R/individuals.R
R/is_landscape.R
R/lambda.R
R/landscape.allelefreq.R
R/landscape.coalinput.R
R/landscape.freq.locnames.R
R/landscape.ind.freq.R
R/landscape.make.genind.R
R/landscape.make.genpop.R
R/landscape.mig.matrix.R
R/landscape.sample.R
R/landscape.setallelefreq.R
R/landscape.write.foreign.R
R/landscape.write.genepop.R
R/landscapeIO.R
R/loci.R
R/pegas_interface.R
R/popstruct.R
R/relatedness.R
R/runsimulation.R
R/update_landscape.R
README.md
man/SimulationComponents.Rd
man/is.landscape.Rd
man/landscape.Fst.Rd
man/landscape.allelecount.Rd
man/landscape.allelefreq.Rd
man/landscape.amova.Rd
man/landscape.amova.locus.Rd
man/landscape.amova.pairwise.Rd
man/landscape.clean.Rd
man/landscape.coalinput.Rd
man/landscape.compress.Rd
man/landscape.democol.Rd
man/landscape.demography.Rd
man/landscape.exp.het.Rd
man/landscape.freq.locnames.Rd
man/landscape.ind.freq.Rd
man/landscape.locus.Rd
man/landscape.locus.states.Rd
man/landscape.locusvec.Rd
man/landscape.make.genind.Rd
man/landscape.make.genpop.Rd
man/landscape.mig.matrix.Rd
man/landscape.mismatchdist.Rd
man/landscape.modify.epoch.Rd
man/landscape.new.empty.Rd
man/landscape.new.epoch.Rd
man/landscape.new.example.Rd
man/landscape.new.floatparam.Rd
man/landscape.new.individuals.Rd
man/landscape.new.intparam.Rd
man/landscape.new.local.demo.Rd
man/landscape.new.locus.Rd
man/landscape.new.switchparam.Rd
man/landscape.obs.het.Rd
man/landscape.ploidy.Rd
man/landscape.populations.Rd
man/landscape.sample.Rd
man/landscape.setallelefreq.Rd
man/landscape.setpopfreq.Rd
man/landscape.simulate.Rd
man/landscape.states.Rd
man/landscape.theta.h.Rd
man/landscape.theta.k.Rd
man/landscape.theta.s.Rd
man/landscape.write.foreign.Rd
rmetasim.Rproj
src/AlleleObj.cc
src/AlleleObj.h
src/AlleleTbl.cc
src/AlleleTbl.h
src/BaseObj.cc
src/BaseObj.h
src/Democlass.cc
src/Democlass.h
src/FastAllele.cc
src/FastAllele.h
src/FastSeqAllele.cc
src/FastSeqAllele.h
src/Genotype.cc
src/Genotype.h
src/Landscape.cc
src/Landscape.h
src/Makevars
src/PackedIndividual.cc
src/PackedIndividual.h
src/RandLib.cc
src/RandLib.h
src/SiteObj.cc
src/SiteObj.h
src/TransMat.cc
src/TransMat.h
src/const.h
src/metasim.h
src/rmetasim.cc
src/rmetasim.h
src/utilities.h
vignettes/ApplyCarryToStage.Rmd
vignettes/ApplyCarryToStage.html
vignettes/CreatingLandscapes.Rmd
vignettes/Sexuality-and-mating.Rmd
vignettes/Simulating.Rmd
vignettes/dioecious-lifecycle.fig
vignettes/dioecious-lifecycle.png
vignettes/rmetasim.Rmd
vignettes/simple-lifecycle.fig
vignettes/simple-lifecycle.png
