landscape.mismatchdist: Calculate a mismatch distribution for a locus in a landscape

In stranda/rmetasim: An Individual-Based Population Genetic Simulation Environment

Calculate a mismatch distribution for a locus in a landscape

Description

Calculate mismatch distribution from a landscape based upon the number of seqregating sites.

Usage

  landscape.mismatchdist(Rland,lnum=1)

Arguments

lnum	locus number to calculate mismatch upon
Rland	the Rmetasim landscape object

Details

Calculates a mismatch distribution for DNA-sequence-based loci.

Value

A matrix with num loci columns and num populations rows. Each element reflects the estimated theta for that population x locus combination

Examples

  exampleland <- landscape.new.example()
  exampleland <- landscape.simulate(exampleland, 4)
  misdist <- landscape.mismatchdist(exampleland,3) #will produce       
  misdist                                          #ridiculous output

stranda/rmetasim documentation built on Aug. 25, 2023, 12:22 p.m.