elbow_curve: Elbow curve for a ranking
In strayMat/warpDE: Differentially expressed genes in cell lineages
Description
Usage
Arguments
Value
Description
Plot an elbow curve of the distribution of distances from a rankingDE. It gives an idea of the shape of the distribution and can help select a threshold for the differntially expressed genes.
Usage
1
elbow_curve(ranking, xmax = nrow(ranking), xfit = 0.005 * nrow(ranking))
Arguments
ranking
a rankingDE object.
xmax
integer, at which rank we cut off the curve. (default is length(ranking))
xfit
integer, cutoff for the plot of the tangent at the origin (default is 0.005*length(ranking)).
Value
returns
a plot of the distances against the ranks of the elements in the ranking.
rank threshold
strayMat/warpDE documentation built on June 1, 2019, 12:51 a.m.
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Description Usage Arguments Value
Description
Plot an elbow curve of the distribution of distances from a rankingDE. It gives an idea of the shape of the distribution and can help select a threshold for the differntially expressed genes.
Usage
1 | elbow_curve(ranking, xmax = nrow(ranking), xfit = 0.005 * nrow(ranking))
|
Arguments
ranking |
a |
xmax |
integer, at which rank we cut off the curve. (default is length(ranking)) |
xfit |
integer, cutoff for the plot of the tangent at the origin (default is 0.005*length(ranking)). |
Value
returns
a plot of the distances against the ranks of the elements in the ranking.
rank threshold
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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