quantiles_shared: Compare two rankings by counting the shared elements along...

In strayMat/warpDE: Differentially expressed genes in cell lineages

Description

Compares two rankingDE by computing the shared elements in different cumulative quantiles of the rankings.

Usage

quantiles_shared(ranking1, ranking2, quantiles = c(0.01, seq(0.05, 1,
  length.out = 20)), nmax = min(dim(ranking.df(ranking1))[1],
  dim(ranking.df(ranking2))[1]))

Arguments

ranking1	a first rankingDE object.
ranking2	a second rankingDE object.
quantiles	quantiles of the distribution that we wat to compare (default is is 20-quantiles).
nmax	integer, design the last elemtns where to stop the comparison (default is the minimum length of the two rankings).

Value

returns a dataframe displaying the number of common elements between the two ranking in the cumulative quantiles.

strayMat/warpDE documentation built on June 1, 2019, 12:51 a.m.