warpDEDataSet-class: Class 'warpDEDataSet'

In strayMat/warpDE: Differentially expressed genes in cell lineages

Description

The warpDEDataSet class holds data relevant for performing gene differential expression analysis with the warpDE package, primarily a filtered, normalized count matrix of the data and a vecotr of pseudotimes for the cells as well as a vector of the weigths indicating the probability for each cell to belong to one lineage. All warpDE methods can take an object of the class warpDEDataSet as input and will output the same.

Usage

## S4 method for signature 'warpDEDataSet'
counts(x)

## S4 method for signature 'warpDEDataSet'
t(x)

## S4 method for signature 'warpDEDataSet'
w(x)

Arguments

x	a warpDEDataSet object.

Methods (by generic)

• counts: returns the matrix of counts.

• t: returns the vector of pseudotimes..

• w: returns the vector of weights.

strayMat/warpDE documentation built on June 1, 2019, 12:51 a.m.