struckma/synergyfinder: Calculate and Visualize Synergy Scores for Drug Combinations
Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix. This fork has an updated PlotDoseResponse function, with adaptions from hly89, a work-around for knitr compatibility (quite ugly but working) by Stephan Struckmann and a bug fix regarding swapped dimensions for the heatmap plot also by Stephan Struckmann.
Getting started
Browse package contents
Package details |
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| Author | Liye He <liye.he@helsinki.fi>, Jing Tang <jing.tang@helsinki.fi>, Stephan Struckmann <stephan.struckmann@gmail.com> |
| Bioconductor views | Software Statistical Method |
| Maintainer | Liye He <liye.he@helsinki.fi> |
| License | Artistic License 2.0 |
| Version | 1.3.0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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