ReshapeData: Transform the response data from the data frame format to...

In struckma/synergyfinder: Calculate and Visualize Synergy Scores for Drug Combinations

Description

A function to transform the response data from the data frame format to dose-response matrixes

Usage

ReshapeData(data, data.type = "viability")

Arguments

data	drug combination response data in a data frame format
data.type	a parameter to specify the response data type which can be either "viability" or "inhibition".

Details

The input data must contain the following columns: BlockID, DrugRow, DrugCol, Row, Col, Response, ConcRow, ConcCol, ConcUnit

Value

a list of the following components:

dose.response.mats	a list of the dose-response matrixes with %inhibition as the response data. Row names and column names are drug concentrations.
drug.pairs	a data frame contains the name of the row drug, the name of the column drug, concentration unit and block IDs.

Author(s)

Liye He [e-mail]

Examples

data("mathews_screening_data")
data <- ReshapeData(mathews_screening_data)

struckma/synergyfinder documentation built on May 17, 2019, 11:18 p.m.