PlotDoseResponse: Visualize the drug combination dose-response data

In struckma/synergyfinder: Calculate and Visualize Synergy Scores for Drug Combinations

Description

A function to visualize the drug combination dose-response data

Usage

PlotDoseResponse(data, save.file = FALSE, pair.index = NULL, Emin = NA,
  Emax = NA, ...)

Arguments

data	a list object generated by function ReshapeData.
save.file	a parameter to specify if the visualization results are saved as pdf files in current working directory or not. If it is FALSE, the results are returned as a list of the plots. It is FALSE by default.
pair.index	a parameter to specify which drug combination if there are many drug combinations in the data. By default, it is NULL so that the visualization of all the drug combinations in the data is returned.
Emin	the minimal effect of the drug used in the 4-parameter log-logistic function to fit the dose-response curve. If it is not NA, it is fixed the value assigned by the user. Defaults to NA.
Emax	the maximal effect of the drug used in the 4-parameter log-logistic function to fit the dose-response curve. If it is not NA, it is fixed the value assigned by the user. Defaults to NA.
...	further graphical parameters from plot for plotting the single drug dose-response curve. Use e.g., cex.lab to change the axis label size and cex.axis to change the tick size of axises.

Value

if save.file parameter is TRUE, pdf files are returned. Otherwise, the plots are only displayed.

Author(s)

Liye He [e-mail]

Examples

data("mathews_screening_data")
data <- ReshapeData(mathews_screening_data)
PlotDoseResponse(data)

struckma/synergyfinder documentation built on May 17, 2019, 11:18 p.m.