iES_cal2: iES calculation Function

In suke18/iPath: iPath pipeline for detecting perturbed pathways at individual level

Description

This function calculates the iES matrix which is the core of iPath.

Usage

iES_cal2(Y, GSDB, BPPARAM = NULL, nPro = 0)

Arguments

Y	is the expression matrix.
GSDB	is the gene set database.
BPPARAM	parameters from the BiocParallel.
nPro	number of processors (default = 0).

Value

a matrix with rows corresponding to the pathways and columns corresponding to the patients.

Examples

data(PRAD_data)
data(GSDB_example)
iES_mat = iES_cal2(prad_exprs, GSDB = GSDB_example)

suke18/iPath documentation built on July 23, 2021, 1:08 p.m.