iES_survPlot: iES survival for a certain pathway

In suke18/iPath: iPath pipeline for detecting perturbed pathways at individual level

Description

This function allows you to express your love of cats.

Usage

iES_survPlot(iES_mat, cli, gs_str, indVec = NULL, npatsThre = 5, title = TRUE)

Arguments

iES_mat, gs_str	is the GSDB iES_mat with tumor and normal and gs name.
cli	clinical data corresponding to the expression data.
indVec	the binary indicator for normal(0) and tumor (1) patients.
npatsThre	the threshold of number of patients for survival analysis.
title	boolean true or false for including the title (gs_str) in the ggplot.

Value

ggplot object containing the KM plot.

Examples

data(PRAD_data)
data(GSDB_example)
iES_mat = iES_cal2(prad_exprs, GSDB = GSDB_example)
iES_survPlot(iES_mat, cli = prad_cli, gs_str = "SimPathway1", indVec = prad_inds)

suke18/iPath documentation built on July 23, 2021, 1:08 p.m.