prad_exprs: expression matrix for PRAD cancer patients in TCGA

In suke18/iPath: iPath pipeline for detecting perturbed pathways at individual level

Description

prad_exprs is the RPKM expression matrix which belongs to "matrix" class. The data includes 102 samples about human preimplantation embryos and embryonic stem cells. It contains 19304 genes after removing genes with extreme high dropout rate.

Usage

data("PRAD_data")

Format

An object of "matrix" class contains the mRNA expressions

Source

https://www.bioconductor.org/packages/release/bioc/html/RTCGA.html

References

Kosinski M, Biecek P (2021). RTCGA: The Cancer Genome Atlas Data Integration. R package version 1.22.0, https://rtcga.github.io/RTCGA.

Examples

data("PRAD_data")
prad_exprs[1:10, 1:4]

suke18/iPath documentation built on July 23, 2021, 1:08 p.m.