Man pages for sunny-zq/INGRID
InGRiD: Semi-supervised Identification of Cancer Subgroups using Survival Outcomes and Overlapping Grouping Information

checkDatacheckData function
CheckedData-classAn S4 class to represent checked data.
coef-FitGene-methodSPLS coefficient estimates for genes
coef-FitPath-methodLASSO coefficient estimates for pathways
FitGene-classAn S4 class to represent gene-level analysis results
FitPath-classAn S4 class for pathway-level analysis results
geneRegroupgeneRegroup function
prefilterprefilter function
Prefiltered-classAn S4 class to represent pre-filtered data.
RegroupGene-classAn S4 class to represent regrouped gene set.
selectGene-methodsGene selection using SPLS model
selectPath-methodspathway selection using LASSO
show-CheckedData-methodcheckData summary
show-FitGene-methodSummary of selectGene results
show-FitPath-methodSummary of selectPath results
show-Prefiltered-methodPrefiltering summary
show-RegroupGene-methodGene Regrouping summary
TCGA_fullFull TCGA data
sunny-zq/INGRID documentation built on Oct. 15, 2019, 6:45 p.m.