Files in sunny-zq/INGRID
InGRiD: Semi-supervised Identification of Cancer Subgroups using Survival Outcomes and Overlapping Grouping Information
.Rbuildignore
.Rproj.user/1EA410B3/build_options
.Rproj.user/1EA410B3/cpp-definition-cache
.Rproj.user/1EA410B3/pcs/debug-breakpoints.pper
.Rproj.user/1EA410B3/pcs/files-pane.pper
.Rproj.user/1EA410B3/pcs/source-pane.pper
.Rproj.user/1EA410B3/pcs/windowlayoutstate.pper
.Rproj.user/1EA410B3/pcs/workbench-pane.pper
.Rproj.user/1EA410B3/persistent-state
.Rproj.user/1EA410B3/rmd-outputs
.Rproj.user/1EA410B3/saved_source_markers
.Rproj.user/1EA410B3/sdb/per/t/31534F6B
.Rproj.user/1EA410B3/sdb/per/t/3BF409B6
.Rproj.user/1EA410B3/sdb/per/t/6F29E4F3
.Rproj.user/1EA410B3/sdb/per/t/79EF3DA7
.Rproj.user/1EA410B3/sdb/per/t/9D24E16C
.Rproj.user/1EA410B3/sdb/per/t/BD34F893
.Rproj.user/1EA410B3/sdb/per/t/C7E49A6C
.Rproj.user/1EA410B3/sdb/per/t/D6055791
.Rproj.user/1EA410B3/sdb/per/t/D85C9EA
.Rproj.user/1EA410B3/sdb/per/t/E52AC273
.Rproj.user/1EA410B3/sdb/per/u/F0BD42F2
.Rproj.user/1EA410B3/sdb/prop/13721E77
.Rproj.user/1EA410B3/sdb/prop/2BA81393
.Rproj.user/1EA410B3/sdb/prop/4F4F0DE3
.Rproj.user/1EA410B3/sdb/prop/587F3640
.Rproj.user/1EA410B3/sdb/prop/76BB1043
.Rproj.user/1EA410B3/sdb/prop/82A58AD9
.Rproj.user/1EA410B3/sdb/prop/9989DEA1
.Rproj.user/1EA410B3/sdb/prop/9A481AA3
.Rproj.user/1EA410B3/sdb/prop/9F37E9AD
.Rproj.user/1EA410B3/sdb/prop/BCFF67BC
.Rproj.user/1EA410B3/sdb/prop/C12D8898
.Rproj.user/1EA410B3/sdb/prop/C30C3CC1
.Rproj.user/1EA410B3/sdb/prop/C335AA8F
.Rproj.user/1EA410B3/sdb/prop/D0E82BD7
.Rproj.user/1EA410B3/sdb/prop/D82C1886
.Rproj.user/1EA410B3/sdb/prop/INDEX
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/23D4CEA
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/31534F6B
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/3BF409B6
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/6F29E4F3
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/79EF3DA7
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/9D24E16C
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/BD34F893
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/C7E49A6C
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/D6055791
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/D85C9EA
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/E52AC273
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/F0BD42F2
.Rproj.user/1EA410B3/sdb/s-44D1E2B2/lock_file
.Rproj.user/1EA410B3/session-persistent-state
.Rproj.user/shared/notebooks/paths
DESCRIPTION
INGRID.Rproj
NAMESPACE
R/.Rhistory
R/AllClasses.R
R/AllGenerics.R
R/TCGA.R
R/TCGA_full.R
R/checkData.R
R/correctp_cox.R
R/cv_eta.R
R/geneRegroup.R
R/getIndicCViAUCSurvROCTest.R
R/logplik.R
R/methods_DataCheck.R
R/methods_FitGene.R
R/methods_FitPath.R
R/methods_Prefiltered.R
R/methods_RegroupGene.R
R/pls_cox.R
R/predict_pls_cox.R
R/prefilter.R
R/selectGene.R
R/selectPath.R
R/splsRcox_cv.R
R/spls_cox.R
R/spls_dv.R
R/ust.R
README.md
data/.Rapp.history
data/TCGA.RData
data/TCGA_full.RData
inst/doc/INGRID-example.pdf
man/CheckedData-class.Rd
man/FitGene-class.Rd
man/FitPath-class.Rd
man/Prefiltered-class.Rd
man/RegroupGene-class.Rd
man/TCGA.Rd
man/TCGA_full.Rd
man/checkData.Rd
man/coef-FitGene-method.Rd
man/coef-FitPath-method.Rd
man/geneRegroup.Rd
man/prefilter.Rd
man/selectGene-methods.Rd
man/selectPath-methods.Rd
man/show-CheckedData-method.Rd
man/show-FitGene-method.Rd
man/show-FitPath-method.Rd
man/show-Prefiltered-method.Rd
man/show-RegroupGene-method.Rd
vignettes/INGRID-example-concordance.tex
vignettes/INGRID-example-plot.pdf
vignettes/INGRID-example-plot1.pdf
vignettes/INGRID-example-plot3.pdf
vignettes/INGRID-example.Rnw
vignettes/INGRID-example.aux
vignettes/INGRID-example.log
vignettes/INGRID-example.out
vignettes/INGRID-example.pdf
vignettes/INGRID-example.tex
vignettes/Rplots.pdf
