sunshanwen/BP4RNAseq: A babysitter's package for reproducible RNA-seq analysis

An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. The package can process bulk RNA-seq data and single-cell RNA-seq data. You can only provide the taxa name and the accession id of RNA-seq data deposited in the National Center for Biotechnology Information (NCBI). After a cup of tea or longer, you will get formated gene expression data as gene count and transcript count based on both alignment-based and alignment-free workflows.

Getting started

Package details

Bioconductor views GeneExpressionWorkflow
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sunshanwen/BP4RNAseq documentation built on March 28, 2022, 5:35 p.m.