Man pages for sunshanwen/BP4RNAseq
A babysitter's package for reproducible RNA-seq analysis

adapter_trimTrim samples with adapter using cutadapt.
align_based_quanalignment-based workflow
align_free_quanAlignment-free expression quantification with Salmon at gene...
averageTake averages with alignment-free and alignment-based...
check_depCheck the existence of dependancies.
down2quanDownload the RNA-seq samples from the NCBI and produce the...
down_RefDownload the latest reference genome, transcript and the...
fastq2quanProduce the quantifications of gene expression based on the...
qc_testQuality assessments of raw sequence data.
quality_trimTrim poor quality samples using cutadapt.
scRNA_quanscRNA expression quantification with Salmon.
sra2fastqConvert SRA format to fastq format and return the sequencing...
sra_downloadDownload RNA-seq samples from the NCBI.
sunshanwen/BP4RNAseq documentation built on March 28, 2022, 5:35 p.m.