sra2fastq: Convert SRA format to fastq format and return the sequencing...

In sunshanwen/BP4RNAseq: A babysitter's package for reproducible RNA-seq analysis

Convert SRA format to fastq format and return the sequencing type, i.e., single-end (SE) or paired-end (PE) reads.

Description

Convert all SRA files to fastq files and return the sequencing type, i.e., single-end (SE) or paired-end (PE) reads.

Usage

sra2fastq(threads = 4)

Arguments

threads

the number of threads to be used. Default is 4.

Value

A string indicates single-end (SE) or paired-end (PE) reads.

Examples

sra_download(accession = 'SRR11427582')
sra2fastq()

sunshanwen/BP4RNAseq documentation built on March 28, 2022, 5:35 p.m.