qc_test: Quality assessments of raw sequence data.

In sunshanwen/BP4RNAseq: A babysitter's package for reproducible RNA-seq analysis

Quality assessments of raw sequence data.

Description

Per base sequence quality, per sequence quality scores and adapter content of raw sequence data are assessed and tested based on FastQC.

Usage

qc_test(threads = 4, scRNA = FALSE, fastqc_add = NULL)

Arguments

threads	the number of threads to be used. Default is 4.
scRNA	logic, whether single-cell RNA-seq is quantified or not. Default is FALSE.
fastqc_add	additional parameters to customize FASTQC for quality control. Default is NULL.

Value

Problematic samples' names

Examples

qc_test(scRNA = TRUE)

sunshanwen/BP4RNAseq documentation built on March 28, 2022, 5:35 p.m.