qc_test: Quality assessments of raw sequence data.

View source: R/qc_test.R

qc_testR Documentation

Quality assessments of raw sequence data.

Description

Per base sequence quality, per sequence quality scores and adapter content of raw sequence data are assessed and tested based on FastQC.

Usage

qc_test(threads = 4, scRNA = FALSE, fastqc_add = NULL)

Arguments

threads

the number of threads to be used. Default is 4.

scRNA

logic, whether single-cell RNA-seq is quantified or not. Default is FALSE.

fastqc_add

additional parameters to customize FASTQC for quality control. Default is NULL.

Value

Problematic samples' names

Examples


qc_test(scRNA = TRUE)



sunshanwen/BP4RNAseq documentation built on March 28, 2022, 5:35 p.m.