Files in sunshanwen/BP4RNAseq
A babysitter's package for reproducible RNA-seq analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/adapter_trim.R
R/align_based_quan.R
R/align_free_quan.R
R/average.R
R/check_dep.R
R/down2quan.R
R/down_Ref.R
R/fastq2quan.R
R/qc_test.R
R/quality_trim.R
R/scRNA_quan.R
R/sra2fastq.R
R/sra_download.R
README.Rmd
README.md
cran-comments.md
inst/CITATION
inst/News.md
inst/extdata/Trimmed_test_read_2.fastq
inst/extdata/test_Homo_sapiens.fna
inst/extdata/test_Homo_sapiens.gff
inst/extdata/test_gene_alignment_based_quantification.csv
inst/extdata/test_gene_alignment_free_quantification.csv
inst/extdata/test_read_1.fastq
inst/extdata/test_read_2.fastq
inst/extdata/test_read_2_fastqc.zip
inst/extdata/test_transcript_Homo_sapiens.fna
inst/extdata/test_transcript_alignment_based_quantification.csv
inst/extdata/test_transcript_alignment_free_quantification.csv
inst/prepDE_R.py
install_depends.sh
man/adapter_trim.Rd
man/align_based_quan.Rd
man/align_free_quan.Rd
man/average.Rd
man/check_dep.Rd
man/down2quan.Rd
man/down_Ref.Rd
man/fastq2quan.Rd
man/qc_test.Rd
man/quality_trim.Rd
man/scRNA_quan.Rd
man/sra2fastq.Rd
man/sra_download.Rd
tests/testthat.R
tests/testthat/test-datasets_url.R
tests/testthat/test-fastqc_r.R
tests/testthat/test-get_adapter.R
vignettes/.gitignore
vignettes/vignette.Rmd
