Man pages for sunshanwen/BP4RNAseq
A babysitter's package for reproducible RNA-seq analysis
| adapter_trim | Trim samples with adapter using cutadapt. |
| align_based_quan | alignment-based workflow |
| align_free_quan | Alignment-free expression quantification with Salmon at gene... |
| average | Take averages with alignment-free and alignment-based... |
| check_dep | Check the existence of dependancies. |
| down2quan | Download the RNA-seq samples from the NCBI and produce the... |
| down_Ref | Download the latest reference genome, transcript and the... |
| fastq2quan | Produce the quantifications of gene expression based on the... |
| qc_test | Quality assessments of raw sequence data. |
| quality_trim | Trim poor quality samples using cutadapt. |
| scRNA_quan | scRNA expression quantification with Salmon. |
| sra2fastq | Convert SRA format to fastq format and return the sequencing... |
| sra_download | Download RNA-seq samples from the NCBI. |
