Man pages for susjoh/crimaptools
Tools for preparing files and parsing output for the programme Cri-MAP
| characterise_recomb_landscape | characterise_recomb_landscape: Characterise recombination... |
| check_double_crossovers | check_double_crossovers: Split chromosomes into segments of... |
| create_crimap_input | create_crimap_input: Create a CriMAP input file. |
| deer.abel | SNP genotype data from Red Deer (Cervus Elaphus) on the Isle... |
| deer.famped | CriMAP pedigrees of Red Deer (Cervus Elaphus) on the Isle of... |
| deer.ped | Pedigree of 14 Red Deer (Cervus Elaphus) on the Isle of Rum,... |
| format_family_pedigree | format_family_pedigree: Format the family pedigree for... |
| format_pedigree | format_pedigree: Format Pedigree This function formats the... |
| genabel_subset | genabel_subset: Subset a genabel dataset based on specified... |
| InfLengthFunc | InfLengthFunc: Determine positions of first and last... |
| parse_built_insert | parse_build_insert: Parse crossover information from CriMAP... |
| parse_crossovers | parse_crossovers: Parse crossover information from CriMAP... |
| parse_flips | parse_flips: Parse output from CriMAP flips |
| parse_loc | parse_loc: Parse output from CriMAP .loc files |
| parse_map | parse_map: Parse map from CriMAP map output |
| parse_map_build | parse_map_build: Parse map from CriMAP chrompic output |
| parse_map_chrompic | parse_map_chrompic: Parse map from CriMAP chrompic output |
| parse_mend_err | parse_mend_err: Parse output from CriMAP .loc files |
| RecCountFunc | RecCountFunc: Determine recombination count from chrompic... |
| revise_double_crossovers | revise_double_crossovers: remove erroneously phased loci from... |
| run_crimap_build | run_crimap_build: Run chrompic in crimap |
| run_crimap_chrompic | run_crimap_chrompic: Run chrompic in crimap |
| run_crimap_flips | run_crimap_flips: Run flips |
| run_crimap_map | run_crimap_map: Run prepare in crimap |
| run_crimap_prepare | run_crimap_prepare: Run prepare in crimap |
| run_crimap_twopoint | run_crimap_twopoint: Run twopoint in crimap |
| SingletonStatusFunc | SingletonStatusFunc: Flag if there is a double crossover... |
| switch_position_cmpstring | switch_position_cmpstring: function to pull out chromosome... |
