Man pages for susjoh/crimaptools
Tools for preparing files and parsing output for the programme Cri-MAP

check_double_crossoverscheck_double_crossovers: Split chromosomes into segments of...
create_crimap_inputcreate_crimap_input: Create a CriMAP input file.
deer.abelSNP genotype data from Red Deer (Cervus Elaphus) on the Isle...
deer.fampedCriMAP pedigrees of Red Deer (Cervus Elaphus) on the Isle of...
deer.pedPedigree of 14 Red Deer (Cervus Elaphus) on the Isle of Rum,...
format_family_pedigreeformat_family_pedigree: Format the family pedigree for...
format_pedigreeformat_pedigree: Format Pedigree This function formats the...
genabel_subsetgenabel_subset: Subset a genabel dataset based on specified...
InfLengthFuncInfLengthFunc: Determine positions of first and last...
parse_built_insertparse_build_insert: Parse crossover information from CriMAP...
parse_crossoversparse_crossovers: Parse crossover information from CriMAP...
parse_flipsparse_flips: Parse output from CriMAP flips
parse_locparse_loc: Parse output from CriMAP .loc files
parse_mapparse_map: Parse map from CriMAP map output
parse_map_buildparse_map_build: Parse map from CriMAP chrompic output
parse_map_chrompicparse_map_chrompic: Parse map from CriMAP chrompic output
parse_mend_errparse_mend_err: Parse output from CriMAP .loc files
RecCountFuncRecCountFunc: Determine recombination count from chrompic...
revise_double_crossoversrevise_double_crossovers: remove erroneously phased loci from...
run_crimap_buildrun_crimap_build: Run chrompic in crimap
run_crimap_chrompicrun_crimap_chrompic: Run chrompic in crimap
run_crimap_flipsrun_crimap_flips: Run flips
run_crimap_maprun_crimap_map: Run prepare in crimap
run_crimap_preparerun_crimap_prepare: Run prepare in crimap
SingletonStatusFuncSingletonStatusFunc: Flag if there is a double crossover...
switch_position_cmpstringswitch_position_cmpstring: function to pull out chromosome...
susjoh/crimaptools documentation built on Aug. 12, 2017, 10:54 a.m.