format_pedigree: format_pedigree: Format Pedigree This function formats the...

In susjoh/crimaptools: Tools for preparing files and parsing output for the programme Cri-MAP

Description

format_pedigree: Format Pedigree This function formats the pedigree for downstream analysis.

Usage

format_pedigree(ped, pedigree.type = "simple")

Arguments

ped	Pedigree object in "simple" format (Three columns for ANIMAL, MOTHER and FATHER) or in "plink" format (Five to Six columns for FAMILY, ANIMAL, FATHER, MOTHER, SEX and Phenotype, where the phenotype column is optional). The simple argument can recognise the order of parents if they are named sensibly. Run simple.ped.name.rules() for an example.
pedigree.type	Defaults to "simple", can also accept "plink" which is equivalent for for first 5 to 6 columns of a PLINK .ped file.

susjoh/crimaptools documentation built on Oct. 13, 2020, 3:24 p.m.