parse_crossovers: parse_crossovers: Parse crossover information from CriMAP...
In susjoh/crimaptools: Tools for preparing files and parsing output for the programme Cri-MAP
View source: R/parse_crossovers.R
Description
parse_crossovers: Parse crossover information from CriMAP chrompic output
Usage
1
2
parse_crossovers(chrompicfile, familyPedigree,
remove.zero.inf.loci = TRUE)
Arguments
chrompicfile
File with output from chrompic
familyPedigree
data.frame containing columns ANIMAL, FATHER, MOTHER
and FAMILY. FAMILY defines family groups for crimap. IDs in ANIMAL can be
repeated within and between families if necessary. Should be that used in
create_crimap_input.
remove.zero.inf.loci
Logical, default = TRUE. Remove IDs with no
informative loci.
susjoh/crimaptools documentation built on Oct. 13, 2020, 3:24 p.m.
R Package Documentation
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View source: R/parse_crossovers.R
Description
parse_crossovers: Parse crossover information from CriMAP chrompic output
Usage
1 2 | parse_crossovers(chrompicfile, familyPedigree,
remove.zero.inf.loci = TRUE)
|
Arguments
chrompicfile |
File with output from chrompic |
familyPedigree |
data.frame containing columns ANIMAL, FATHER, MOTHER and FAMILY. FAMILY defines family groups for crimap. IDs in ANIMAL can be repeated within and between families if necessary. Should be that used in create_crimap_input. |
remove.zero.inf.loci |
Logical, default = TRUE. Remove IDs with no informative loci. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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