API for sydneycytometry/Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
| Global functions | |
|---|---|
| BatchAdjust | Source code |
| barplot_scalingFactors | Source code |
| boxSummaryValsPrePost | Source code |
| call_plotAllAPrePost1ch | Source code |
| copy_indexed_files | Source code |
| create.dt | Man page Source code |
| create.stats | Man page Source code |
| create.sumtable | Man page Source code |
| demo.asinh | Man page |
| demo.batches.1 | Man page |
| demo.clustered | Man page |
| demo.exp | Man page |
| demo.start | Man page |
| demo.sum | Man page |
| do.add.cols | Man page Source code |
| do.aggregate | Man page Source code |
| do.align | Man page Source code |
| do.asinh | Man page Source code |
| do.clip | Man page Source code |
| do.embed.columns | Man page Source code |
| do.filter | Man page Source code |
| do.list.summary | Man page Source code |
| do.list.switch | Man page Source code |
| do.logicle | Man page Source code |
| do.merge.files | Man page Source code |
| do.reorder | Man page Source code |
| do.rescale | Man page Source code |
| do.stats | Man page Source code |
| do.subsample | Man page Source code |
| do.zscore | Man page Source code |
| fc_read | Source code |
| fftRtsne | Man page Source code |
| flipLT1 | Source code |
| get.cluster.origins | Source code |
| get.cluster.proportions | Source code |
| get.colour.pallete | Source code |
| get.geompoint | Source code |
| get.idx.pipe | Source code |
| get.idx.roundclsbracket | Source code |
| get.transitions.as.edges | Source code |
| get80thPercentile | Source code |
| getBatchNumFromFilename | Source code |
| getMinEventCount | Source code |
| getNZ | Source code |
| getScalingFactors | Source code |
| getValueMappings | Source code |
| get_bar_code_from_filename | Source code |
| get_ch_name | Source code |
| get_cols_to_norm | Source code |
| get_cols_to_norm_long_names | Source code |
| get_summaries_per_channel | Source code |
| listBatchesPresent | Source code |
| logToFile | Source code |
| ls_cmd | Source code |
| make.autograph | Man page Source code |
| make.colour.plot | Man page Source code |
| make.multi.plot | Man page Source code |
| make.network.plot | Man page Source code |
| make.pheatmap | Man page Source code |
| make.volcano.plot | Man page Source code |
| package.check | Man page Source code |
| package.install | Man page Source code |
| package.load | Man page Source code |
| parseP | Source code |
| permuteColsPrePost | Source code |
| plot1 | Source code |
| plotAllAPrePost1ch | Source code |
| prep.cytonorm | Man page Source code |
| read.files | Man page Source code |
| run.align | Man page Source code |
| run.chronoclust | Man page Source code |
| run.cytonorm | Man page Source code |
| run.fitsne | Man page Source code |
| run.flowsom | Man page Source code |
| run.harmony | Man page Source code |
| run.knn.classifier | Man page Source code |
| run.pca | Man page Source code |
| run.phenograph | Man page Source code |
| run.prepare.chronoclust | Man page Source code |
| run.ruv | Man page Source code |
| run.tsne | Man page Source code |
| run.umap | Man page Source code |
| sortAnchorsByBatch | Source code |
| totalVar_allEvents | Source code |
| train.cytonorm | Man page Source code |
| train.knn.classifier | Man page Source code |
| varBarPlot | Source code |
| varDiffTotalPrePostT | Source code |
| write.files | Man page Source code |
| write.sumtables | Man page Source code |
