run.harmony: run.harmony - dun Harmony alignment on a data.table
In sydneycytometry/Spectre: A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function allows you to run the 'Harmony' data alignment algorithm on single cell or cytometry data stored in a data.table
Usage
1
Arguments
dat
NO DEFAULT. A data.table with all of the data you wish to align
batch.col
NO default. The column that denotes the batch or dataset that each cell belongs to
align.cols
NO default. The columns you wish to align. For cytometry data, this can be the markers themselves or principle components. For single-cell seq data, principle components are recommended.
append.name
DEFAULT = '_aligned'. Text that will be appended to the new columns containing aligned data
Value
Returns a data.table with aligned data added in new columns.
Author(s)
Thomas M Ashhurst, thomas.ashhurst@sydney.edu.au
Examples
1
cell.dat <- run.harmony()
sydneycytometry/Spectre documentation built on March 20, 2021, 2:15 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function allows you to run the 'Harmony' data alignment algorithm on single cell or cytometry data stored in a data.table
Usage
1 |
Arguments
dat |
NO DEFAULT. A data.table with all of the data you wish to align |
batch.col |
NO default. The column that denotes the batch or dataset that each cell belongs to |
align.cols |
NO default. The columns you wish to align. For cytometry data, this can be the markers themselves or principle components. For single-cell seq data, principle components are recommended. |
append.name |
DEFAULT = '_aligned'. Text that will be appended to the new columns containing aligned data |
Value
Returns a data.table with aligned data added in new columns.
Author(s)
Thomas M Ashhurst, thomas.ashhurst@sydney.edu.au
Examples
1 | cell.dat <- run.harmony()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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