package.install: package.install - a function to install packages required for...
In sydneycytometry/Spectre: A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry data.
Description
Usage
Arguments
Value
Author(s)
References
Examples
View source: R/package.install.R
Description
This function allows you to check to see if all the common use packages dependencies for Spectre are installed. Will only install if the package has not been installed, will not update packages.
Usage
1
See https://sydneycytometry.org.au/spectre for usage instructions and vignettes.
Arguments
type
DEFAULT = "general". If "general", then checks for the packages required for general Spectre usage. If "spatial", then checks for additional packages required for spatial analysis. If "ML", then checks for additional packages required for machine-learing functionality.
Value
returns an error message if one of the common use packages are not installed. Proceeds in order of package importance, and only the first error message encountered will be returned.
Author(s)
Thomas M Ashhurst, thomas.ashhurst@sydney.edu.au
References
https://sydneycytometry.org.au/spectre
Examples
1
2
3
package.install()
package.install(type = 'spatial')
package.install(type = 'ML')
sydneycytometry/Spectre documentation built on March 20, 2021, 2:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) References Examples
View source: R/package.install.R
Description
This function allows you to check to see if all the common use packages dependencies for Spectre are installed. Will only install if the package has not been installed, will not update packages.
Usage
1 | See https://sydneycytometry.org.au/spectre for usage instructions and vignettes.
|
Arguments
type |
DEFAULT = "general". If "general", then checks for the packages required for general Spectre usage. If "spatial", then checks for additional packages required for spatial analysis. If "ML", then checks for additional packages required for machine-learing functionality. |
Value
returns an error message if one of the common use packages are not installed. Proceeds in order of package importance, and only the first error message encountered will be returned.
Author(s)
Thomas M Ashhurst, thomas.ashhurst@sydney.edu.au
References
https://sydneycytometry.org.au/spectre
Examples
1 2 3 | package.install()
package.install(type = 'spatial')
package.install(type = 'ML')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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