Man pages for syspremed/exploBATCHSerial
Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2016).
| assessComBat | Assessing ComBat corrected data |
| assessCorrectBATCH | Assessing data corrected for batch effect using correctBATCH. |
| batchBreast | A vector identifying batches in the breast dataset. |
| batchColon | A vector identifying batches in the colon dataset. |
| bioCL | A vector identifying tumor and normal samples in the colon... |
| Breast | Gene Expression dataset of breast cancer samples in samples... |
| Colon | Gene expression of coon samples in samples by features... |
| correctBatch | Batch correction approach based on the PPCCA model. |
| correctComBat | Batch correction with ComBat |
| expBATCH | Discovering and correcting batch effect. |
| exploBATCH-package | Explore batch effect (exploBATCH) is a package for... |
| findBATCH | A function to formally tests presence of batch effect. |
| pcaBeforeCorrection | PCA before correction. |
| ppccaBeforeCorrection | PPCCA before correction. |
