Description Usage Arguments Details Value References Examples
PPCCA before correction.
1 | ppccaBeforeCorrection(res1, grps, cGsub, batchCL, Conf, type, Ys)
|
res1 |
Results of PPCCA. |
grps |
Number of batches. |
cGsub |
Colors |
batchCL |
A vector identifying batches. |
Conf |
A vector identifying biological classes. |
type |
Names of biological classes. |
Ys |
Expression data |
PPCCA before correction to assess the number of PCs using BIC.
Results in ppccaBeforeCorrection folder in the working directory.
Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.
1 2 3 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
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