Description Usage Arguments Details Value Author(s) References Examples
Assess if batch effect still exists after correctBATCH batch correction.
1 | assessCorrectBATCH(rerun2, res1, nt, rerun22)
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rerun2 |
Results of running findBATCH to assess batch effect. |
res1 |
Selection of the optimal number of PCs. |
nt |
Number of biological classes. |
rerun22 |
Results of running findBATCH to assess biological effect. |
Assess if batch effect still exists after correctBATCH batch correction.
Results in assessCorrectBATCH folder in the working directory.
Gift Nyamundanda and Anguraj Sadanandam
Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.
1 2 3 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
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