Breast: Gene Expression dataset of breast cancer samples in samples...

In syspremed/exploBATCHSerial: Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2016).

Description

Three expression datasets merged together based on matched genes.

Usage

data("Breast")

Format

The format is: num [1:70, 1:363] 11.03 10.54 9.93 10.31 11.02 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:70] "GSM320213.CEL" "GSM320214.CEL" "GSM320215.CEL" "GSM320216.CEL" ... ..$ : chr [1:363] "WFDC2" "ABHD11" "KCNE4" "KLHDC7B" ...

Details

Three expression datasets merged together based on matched genes.

Source

Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.

References

Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.

Examples

data(Breast)
## maybe str(Breast) ; plot(Breast) ...

syspremed/exploBATCHSerial documentation built on May 20, 2019, 8:33 a.m.