Files in tanaylab/repguide
Design CRISPR guide RNAs against DNA repetitive sequences
.Rbuildignore
.Rhistory
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/accessors.R
R/add.R
R/annotate.R
R/compute.R
R/export.R
R/extdata.R
R/guideSet.R
R/import.R
R/package-Repguide.R
R/plot.R
R/select.R
R/utilities.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
data-raw/xu2015_matrices/human_CRISPRi_19bp.matrix
data-raw/xu2015_matrices/human_CRISPRi_20bp.matrix
data-raw/xu2015_matrices/human_CRISPRi_21bp.matrix
index.Rmd
inst/bin/jellyfish-linux
inst/bin/jellyfish-macosx
inst/extdata/LTR12B_mafft_aligned.fasta.gz
inst/extdata/LTR12D_mafft_aligned.fasta.gz
inst/extdata/fuentes_elife_2018_dCas9_peaks.bed
inst/extdata/fuentes_elife_2018_guides.fasta
inst/extdata/hg38_essential_gene_tss_coords.bed
inst/extdata/hg38_fair+new_CAGE_peaks_phase1and2.bed.gz
inst/extdata/hg38_ucsc_rmsk_ltr.txt.gz
man/Repguide.Rd
man/addAlignments.Rd
man/addCombinations.Rd
man/addGuides.Rd
man/addTargets.Rd
man/blacklisted.Rd
man/clustGuides.Rd
man/combinations.Rd
man/createGuideSet.Rd
man/essential_genes.Rd
man/export.Rd
man/guideSet-class.Rd
man/mappings.Rd
man/plotCombinations.Rd
man/plotGuides.Rd
man/plotTargets.Rd
man/repnames.Rd
man/selGuides.Rd
tests/testthat.R
tests/testthat/test-integration.R
vignettes/.gitignore
vignettes/Repguide.Rmd
vignettes/Repguide.html
vignettes/benchmark.Rmd
vignettes/benchmark.html
vignettes/guide_scoring.Rmd
vignettes/guide_scoring.html
