Man pages for tanaylab/repsc
Single-cell expression analysis of transposable elements
| addCounts | Add TE/Gene counts to scSet |
| annoClass | Add TE and gene class annotation to counts |
| calcBackground | Genes should be curated! |
| checkInput | Check validity of input |
| compCounts | Counts number of reads per interval and cell barcode |
| counts | Returns TE intervals from scSet |
| createScSet | Create new scSet object |
| export | Exports results from scSet |
| genes | Returns gene intervals from scSet |
| normCounts | Normalize read counts |
| plotCells | Plot cell summary QC |
| plotFeatures | Plot feature summary QC |
| plotMapping | Plot mapping stats |
| plotPeaks | Plot peak calling QC |
| repnames | Returns transposable element families from scSet |
| Repsc | Repsc |
| scSet-class | An S4 class to store genomic annotations and results of... |
| selectCells | Call cell barcodes |
| selectFeatures | Adds gene/te stats to scSet |
| selectPeaks | Selects enriched signal on consensus models |
| tes | Returns TE intervals from scSet |
