export: Exports results from scSet

In tanaylab/repsc: Single-cell expression analysis of transposable elements

Description

Exports results from scSet

Usage

export(scSet, ...)

Arguments

scSet	scSet containing the results
outdir	String. Creates a new directory with timestamp prefix in outdir and exports results. If NULL and force = TRUE, the folder is created in the current working directory.
full	Logical. If TRUE, additionally exports stats for all guideRNAs and combinations (instead of only selected guides).
force	Logical. If TRUE and outdir = NULL, writes output to new folder in current working directory.
workspace	Logical. If FALSE (the default), suppresses additional export of scSet as .RData file.
dpi	Integer. Resolution of exported images.

Examples

## Not run: 
gs <- createscSet(Hsapiens, tes = te_annotation_df)
gs <- addTargets(gs, targets = 'LTR13')
gs <- addGuides(gs, guide_length = 16, n_mismatches = 0, gc_content = c(0.25, 0.9), n_clust = 12)
gs <- plotGuides(gs)
export(gs, outdir = NULL, force = TRUE) # Creates new folder in current working directory and exports results  

## End(Not run)

tanaylab/repsc documentation built on Jan. 9, 2021, 9:39 a.m.