repnames: Returns transposable element families from scSet
In tanaylab/repsc: Single-cell expression analysis of transposable elements

Description Usage Arguments Value See Also Examples

Retrieves all available families in the provided scSet that match defined characteristics.

1	repnames(scSet, pattern = NULL, fixed = FALSE)

`scSet`	scSet object to query.
`pattern`	Regular expression. Returns only families that match `pattern`.
`fixed`	Logical. If `TRUE`, `pattern` is matched as is.

Character vector.

createscSet()

## Not run: 
gs <- createscSet(genome = Hsapiens, tes = te_annotation_df)
families <- names(gs, pattern = 'LTR12') # returns all families containing 'LTR12' in their name.

# Using a pattern not found in scSet will suggest similar hits, e.g.:
names(gs, pattern = 'LTR5HS')

## End(Not run)