selectCells: Call cell barcodes

Description Usage Arguments

Description

Call cell barcodes

Usage

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selectCells(scSet, method = "size", min_size = 0, max_mito = 1,
  min_ribo = 0, lower = 100, niters = 10000, fdr = 0.01)

Arguments

method

Character. 'Emptydrops' (the default) or 'size' are currently supported.

min_size

Integer. Size parameter, minimal number of molecules per cell.

lower

Integer. Emptydrops parameter, see

niters

Integer. Emptydrops parameter, see

fdr

Numeric. Emptydrops parameter, see


tanaylab/repsc documentation built on Jan. 9, 2021, 9:39 a.m.