selectCells: Call cell barcodes
In tanaylab/repsc: Single-cell expression analysis of transposable elements
Description
Call cell barcodes
Usage
1
2
selectCells(scSet, method = "size", min_size = 0, max_mito = 1,
min_ribo = 0, lower = 100, niters = 10000, fdr = 0.01)
Arguments
method
Character. 'Emptydrops' (the default) or 'size' are currently supported.
min_size
Integer. Size parameter, minimal number of molecules per cell.
lower
Integer. Emptydrops parameter, see
niters
Integer. Emptydrops parameter, see
fdr
Numeric. Emptydrops parameter, see
tanaylab/repsc documentation built on Jan. 9, 2021, 9:39 a.m.
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Description
Call cell barcodes
Usage
1 2 | selectCells(scSet, method = "size", min_size = 0, max_mito = 1,
min_ribo = 0, lower = 100, niters = 10000, fdr = 0.01)
|
Arguments
method |
Character. 'Emptydrops' (the default) or 'size' are currently supported. |
min_size |
Integer. Size parameter, minimal number of molecules per cell. |
lower |
Integer. Emptydrops parameter, see |
niters |
Integer. Emptydrops parameter, see |
fdr |
Numeric. Emptydrops parameter, see |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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