shaman_get_test_track_db: returns test misha db
In tanaylab/shaman: shaman - Sampling HiC contAct Matrices for Aparametric Normalization
shaman_get_test_track_db R Documentation
returns test misha db
Description
shaman_get_test_track_db
Sets the current misha DB to the example database provided with shaman.
In the example misha database provided in this package we have created a low-footprint
matrix to examplify the shaman workflow. We included 4.6 million contacts from
ELA K562 dataset covering the hoxd locus (chr2:175e06-178e06) and convergent CTCF regions.
Processing the complete matrix from this study requires downloading the full contact list
and regenerating the reshuffled matrix.
Usage
shaman_get_test_track_db()
tanaylab/shaman documentation built on April 2, 2022, 1:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| shaman_get_test_track_db | R Documentation |
returns test misha db
Description
shaman_get_test_track_db
Sets the current misha DB to the example database provided with shaman.
In the example misha database provided in this package we have created a low-footprint
matrix to examplify the shaman workflow. We included 4.6 million contacts from
ELA K562 dataset covering the hoxd locus (chr2:175e06-178e06) and convergent CTCF regions.
Processing the complete matrix from this study requires downloading the full contact list
and regenerating the reshuffled matrix.
Usage
shaman_get_test_track_db()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.