shaman_gplot_map: plot an observed or expected hic map

In tanaylab/shaman: shaman - Sampling HiC contAct Matrices for Aparametric Normalization

plot an observed or expected hic map

Description

shaman_gplot_map

Usage

shaman_gplot_map(
  points,
  interval_range = NA,
  rotate = TRUE,
  point_size = 0.1,
  add_axis = TRUE
)

Arguments

points	A dataframe containing the points (start1, start2).
rotate	Binary flag, indicating if the plot should be rotated by 45 degrees.
point_size	Cex size of the points in the plot.
add_axis	Binary flag, indicating if axis should be added to plot.

Details

Plots hic contact matrix.

Value

gplot containing the map

Examples

# Set misha db to test
gsetroot(shaman::shaman_get_test_track_db())
points <- gextract("hic_obs", gintervals.2d(2, 176e06, 177e06, 2, 176e06, 177e06))
shaman_gplot_map(points)

tanaylab/shaman documentation built on April 2, 2022, 1:32 a.m.