Man pages for tavareshugo/MagicHelpR
QTL mapping in Arabidopsis MAGIC lines
| addPhenotypes | Add phenotypes to 'MagicGen' object |
| class-MagicGen | MagicGen class |
| downloadArabMagic | Download Arabidopsis MAGIC genotypes |
| estimateFounderEffect | Estimate founder QTL effect |
| getFounderGenotypes | Retrieve SNP genotypes of MAGIC founders from a MagicGen... |
| getGenotypes | Retrieve genotypes from a MagicGen object |
| getMarkers | Retrieve markers from a MagicGen object |
| getPhenotypes | Retrieve phenotypes from a MagicGenPhen object |
| inferMagicFounder | Infer most likely founder for a given SNP |
| magicFounderReconstruct | Calculate MAGIC founder genotype probabilities |
| magicQtlScan | Make a QTL scan - deprecated function |
| scanQtl | Make a QTL scan |
| tidyArabMagic | Tidy Arabidopsis MAGIC genotypes |
