downloadArabMagic: Download Arabidopsis MAGIC genotypes

In tavareshugo/MagicHelpR: QTL mapping in Arabidopsis MAGIC lines

Description

This function downloads SNP genotypes for 1254 SNPs typed with GoldenGate technology and reported in Kover et. al (2009). Files are downloaded from http://mtweb.cs.ucl.ac.uk/mus/www/magic/

Usage

downloadArabMagic(save_dir, tidy = TRUE, example_data = FALSE)

Arguments

save_dir	directory to save all files.
tidy	whether or not to "tidy" the retrieved files. This will call the 'tidyArabMagic()' function. Default: TRUE
example_data	logical. Whether or not to download an example phenotype data.

Value

files are downloaded to a directory of choice.

Examples

## Not run: 
downloadArabMagic("~/temp/magic_snp_1k")

## End(Not run)

tavareshugo/MagicHelpR documentation built on May 4, 2020, 3:01 p.m.